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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV14820610 SARS-CoV-2/Neovison vison/NLD/NB68-031-TS/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758340 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29680 99.49
OEAV14820611 SARS-CoV-2/Neovison vison/NLD/NB68-08/2020 OM758316 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29695 99.54
OEAV14820612 SARS-CoV-2/Neovison vison/NLD/NB68-10/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758329 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29680 99.49
OEAV14820617 SARS-CoV-2/Neovison vison/NLD/NB68-21/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758336 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29683 99.50
OEAV14820621 SARS-CoV-2/Neovison vison/NLD/NB68-28-TS/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758341 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29680 99.49
OEAV14820622 SARS-CoV-2/Neovison vison/NLD/NB68-33-TS/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758360 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29617 99.28
OEAV14820624 SARS-CoV-2/Neovison vison/NLD/NB68-36-TS/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758348 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29680 99.49
OEAV14820627 SARS-CoV-2/Neovison vison/NLD/NB68-41-TS/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758352 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29656 99.41
OEAV14820628 SARS-CoV-2/Neovison vison/NLD/NB68-44-TS/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM758353 RNA viruses Severe acute respiratory syndrome coronavirus 2 Netherlands 2020-11-03 Neogale vison 29833 2022-04-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vreeman,S., Molenaar,R.-J., van den Brand,J., Hakze-van der Honing,R.W. and van de Poel,W.H.M. Virology, WBVR, Houtribweg 39, Lelystad, Flevoland 8221 RA 29683 99.50
OEAV16010472 hCoV-19/mink/Latvia/6065/2021 EPI_ISL_13107806 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-05-13 Neovision vison 29853 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 29853 100.00
OEAV16010473 hCoV-19/mink/Latvia/6066/2021 EPI_ISL_13107807 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-05-13 Neovision vison 29871 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 29871 100.00
OEAV16010481 hCoV-19/mink/Latvia/6078/2021 EPI_ISL_13110243 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-13 Neovison vison 29777 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 27597 92.68
OEAV16010483 hCoV-19/mink/Latvia/6080/2021 EPI_ISL_13110245 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-07 Neovison vison 29777 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 28356 95.23
OEAV16010485 hCoV-19/mink/Latvia/6083/2021 EPI_ISL_13107819 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-22 Neovision vison 29764 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 27061 90.92
OEAV16010487 hCoV-19/mink/Latvia/6085/2021 EPI_ISL_13107821 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-27 Neovision vison 29759 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 29172 98.03
OEAV16010488 hCoV-19/mink/Latvia/6086/2021 EPI_ISL_13110246 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-22 Neovison vison 29777 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 28283 94.98
OEAV16010489 hCoV-19/mink/Latvia/6087/2021 EPI_ISL_13110247 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-22 Neovison vison 29777 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 28843 96.86
OEAV16010490 hCoV-19/mink/Latvia/6088/2021 EPI_ISL_13110248 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-27 Neovison vison 29777 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 28489 95.67
OEAV16010491 hCoV-19/mink/Latvia/6089/2021 EPI_ISL_13110249 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-22 Neovison vison 29604 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 27537 93.02
OEAV16010492 hCoV-19/mink/Latvia/6090/2021 EPI_ISL_13107822 RNA virus Severe acute respiratory syndrome coronavirus 2 Latvia 2021-10-22 Neovision vison 29770 2022-06-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID BIOR Alise Jakovele, Janis Pjalkovskis, Nikita Zrelovs, Monta Briviba, Ivars Silamikelis, Liga Birzniece, Kaspars Megnis, Una Krumina, Guntars Zarins, Vita Rovite, Lauma Freimane, Laila Silamikele, Laura Ansone, Davids Fridmanis, Elina Dimina, Irena Meistere, Daina Pule, Jurijs Perevoscikovs, Uga Dumpis, Janis Klovins Latvian Biomedical Research and Study Centre 28161 94.60
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